Higher-Level Agency and Directionality in Ecology and Earth Science

Ocaña-Pallarès, E., Williams, T. A., López-Escardó, D., Arroyo, A. S., Pathmanathan, J. S., Bapteste, E., Tikhonenkov, D. V., Keeling, P. J., Szöllősi, G. J., & Ruiz-Trillo, I. (2022). Divergent genomic trajectories predate the origin of animals and fungi. Nature.

Data: The raw sequence data and assembled genomes generated in this study have been deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB52884. The genome assemblies are also available in figshare. Protein sequences of the species used in this study were downloaded from the GenBank public databases, Uniprot, JGI genome database and Ensembl genomes. The following specific databases were also used in this study: Pfam A v29, EggNOG emapperdb-4.5.1 and UniProt reference proteomes release 2016_02. The supporting data files of this study are available in figshare.

Code: available at Zenodo

Renck, V., Ludwig, D., Bollettin, P., & El-Hani, C. N. (2022). Exploring Partial Overlaps Between Knowledge Systems in a Brazilian Fishing Community. Human Ecology.

Arellano-Nava, B., Halloran, P. R., Boulton, C. A., Scourse, J., Butler, P. G., Reynolds, D. J., & Lenton, T. M. (2022). Destabilisation of the Subpolar North Atlantic prior to the Little Ice Age. Nature Communications, 13(1), 5008.

• Code: All python code used for the analyses is available in Github.            
• Data: The δ18Orecord24 used in this study was retrieved in July 2020 from NCEI. The Growth Index record23 is also available at NCEI.

Armstrong McKay, D. I., Staal, A., Abrams, J. F., Winkelmann, R., Sakschewski, B., Loriani, S., Fetzer, I., Cornell, S. E., Rockström, J., & Lenton, T. M. (2022). Exceeding 1.5°C global warming could trigger multiple climate tipping points. Science, 377(6611), eabn7950.

Mirabel, A., Girardin, M. P., Metsaranta, J., Campbell, E. M., Arsenault, A., Reich, P. B., & Way, D. (2022). New tree-ring data from Canadian boreal and hemi-boreal forests provide insight for improving the climate sensitivity of terrestrial biosphere models. Science of The Total Environment, 851, 158062.

Pontarotti, G., Dussault, A. C., & Merlin, F. (2022). Conceptualizing the Environment in Natural Sciences: Guest Editorial. Biological Theory, 17(1), 1–3.

El-Hani, C. N. (2022). Bases teórico-filosóficas para o design de educação intercultural como diálogo de saberes. Investigações em Ensino de Ciências, 27(1), 01.

López-Antoñanzas, R., Mitchell, J., Simões, T. R., Condamine, F. L., Aguilée, R., Peláez-Campomanes, P., Renaud, S., Rolland, J., & Donoghue, P. C. J. (2022). Integrative Phylogenetics: Tools for Palaeontologists to Explore the Tree of Life. Biology, 11(8), 1185.

Kemp, L., Xu, C., Depledge, J., Ebi, K. L., Gibbins, G., Kohler, T. A., Rockström, J., Scheffer, M., Schellnhuber, H. J., Steffen, W., & Lenton, T. M. (2022). Climate Endgame: Exploring catastrophic climate change scenarios. Proceedings of the National Academy of Sciences, 119(34), e2108146119.

Linquist, S. (2022). Causal-role myopia and the functional investigation of junk DNA. Biology & Philosophy, 37(4), 28.