Higher-Level Agency and Directionality in Ecology and Earth Science

Poliseli, L., Coutinho, J. G. E., Viana, B., Russo, F., & El-Hani, C. N. (2022). Philosophy of science in practice in ecological model building. Biology & Philosophy, 37(4), 21.

Peddi, B., & Ludwig, D. (n.d.). Relating inclusive innovations to Indigenous and local knowledge: a conceptual framework. 14.

Lima, D. S. da S., Paz, E. M. F. da, El-Hani, C. N., & Japyassú, H. F. (2022). A comparison between affiliative and agonistic behaviours in wild and captive Sapajus libidinosus (Spix, 1823) (Mammalia, Primates, Cebidae). Papéis Avulsos de Zoologia, 62, e202262033.

Sheridan, P. O., Meng, Y., Williams, T. A., & Gubry-Rangin, C. (2022). Recovery of Lutacidiplasmatales archaeal order genomes suggests convergent evolution in Thermoplasmatota. Nature Communications, 13(1), 4110.

DATA: Accession numbers for the 36 newly sequenced genomes presented in this study can be found in Supplementary Data 2 and under the NCBI BioProject PRJNA795910. Public data is available from NCBI, IMG, KEGG, dbCAN, arCOG, PFAM, TIGRFAM and GTDB R202. Source data are provided with this paper.

CODE: Scripts for general manipulation of ALE outputs have been deposited at Github, and additional scripts specific to this work have also been deposited at Github and Zenodo.

Posch, B. C., Zhai, D., Coast, O., Scafaro, A. P., Bramley, H., Reich, P., Ruan, Y.-L., Trethowan, R., Way, D. A., & Atkin, O. (2022). Wheat respiratory O2 consumption falls with night warming alongside greater respiratory CO2 loss and reduced biomass. Journal of Experimental Botany, 73(3), 915–926.

Williams, B. A. P., Williams, T. A., & Trew, J. (2022). Comparative Genomics of Microsporidia. In L. M. Weiss & A. W. Reinke (Eds.), Microsporidia (Vol. 114, pp. 43–69). Springer International Publishing.

Bich, L., & Bechtel, W. (2022). Organization needs organization: Understanding integrated control in living organisms. Studies in History and Philosophy of Science, 93, 96–106.

Gambarotto, A., & Mossio, M. (2022). Enactivism and the Hegelian Stance on Intrinsic Purposiveness. Phenomenology and the Cognitive Sciences.

Mills, D. B., Boyle, R. A., Daines, S. J., Sperling, E. A., Pisani, D., Donoghue, P. C. J., & Lenton, T. M. (2022). Eukaryogenesis and oxygen in Earth history. Nature Ecology & Evolution, 1–13.

Gai, Z., Zhu, M., Ahlberg, P. E., & Donoghue, P. C. J. (2022). The Evolution of the Spiracular Region From Jawless Fishes to Tetrapods. Frontiers in Ecology and Evolution, 10, 887172.