Publications

Hunt, G., M.J. Hopkins and S. Lidgard (2015). "Simple versus complex models of trait evolution and stasis as a response to environmental change." Proceedings of the National Academy of Sciences, United States of America 112: 4885–4890.

James, J., Nelson, P., & Masel, J. (2022). Differential retention of Pfam domains creates long-term evolutionary trends [Preprint]. Evolutionary Biology.

Laland K.N., T. Uller T, M.W. Feldman, K. Sterelny K, G.B. Müller, A. Moczek A, E. Jablonka, and J. Odling-Smee. (2015). “The extended evolutionary synthesis: its structure, assumptions and predictions.” Proceedings of the Royal Society, Part B 282. 20151019.

Laland, K.N., J. Odling-Smee, and S.F. Gilbert. (2008). “EvoDevo and Niche Construction: Building Bridges.” Journal of Experimental Zoology 310B:549–566.

Livnat, A., & Melamed, D. (2023). Evolutionary honing in and mutational replacement: how long-term directed mutational responses to specific environmental pressures are possible. Theory in Biosciences, 142(2), 87–105.

Lloyd, D., Nanjundiah, V., Engelmann, W., & Johnsson, A. (2023). Ultradian rhythms: Life’s dance to the music of time*. Journal of Biosciences, 48(4), 34.

Love, A. C., & Dresow, M. (2022). Organizing Interdisciplinary Research on Purpose. BioScience, 72(4), 321–323.

Love, A. C., Grabowski, M., Houle, D., Liow, L. H., Porto, A., Tsuboi, M., Voje, K. L., & Hunt, G. (2021). Evolvability in the fossil record. Paleobiology, 1–24.

Love, A.C., Grabowski, M., Houle, D., Hsiang Liow, L., Porto, A., Tsuboi, M., Voje, K.L. and Hunt, G. (2021). “Evolvability in the fossil record.” Paleobiology 1–24. Doi:10/1017/pab.2021.36.

Lowe, C. B., M. Kellis, A. Siepel, B.J. Raney, M. Clamp, S.R. Salama, D.M. Kingsley, K. Lindblad-Toh, and D. Haussler, (2011). “Three periods of regulatory innovation during vertebrate evolution.” Science 333:1019–1024.

Mangan, R. J., Alsina, F. C., Mosti, F., Sotelo-Fonseca, J. E., Snellings, D. A., Au, E. H., Carvalho, J., Sathyan, L., Johnson, G. D., Reddy, T. E., Silver, D. L., & Lowe, C. B. (2022). Adaptive sequence divergence forged new neurodevelopmental enhancers in humans. Cell, 185(24), 4587-4603.e23.

Maynard Smith. J. and Szathmary, E. (1995). The Major Transitions in Evolution. Oxford: Oxford University Press.

McShea, D.W. (2012). “Upper-directed systems: a new approach to teleology in biology.” Biology and Philosophy 27:663–688.

McShea, D.W. and R.N. Brandon. (2010). Biology’s First Law: The Tendency for Diversity and Complexity to Increase in Biological Systems. Chicago: University of Chicago Press.

Michod, R.E. (2007). “Evolution of individuality during the transition from unicellular to multicellular life.” Proceedings of the National Academy of Sciences, United States of America 104(suppl 1):8613–8618.

Michod, R.E. and Roze, D. (2001). “Cooperation and conflict in the evolution of multicellularity.” Heredity 86:1–7.

Moreno, A. (2007). “A systemic approach to the origin of biological organization.” In Systems Biology: Philosophical Foundations. Edited by F.C. Boogerd, F.J. Bruggeman, J.S. Hofmeyr and H.V. Westerhoff. Amsterdam: Elsevier.

Munasinghe, M., & Ågren, J. A. (2023). When and why are mitochondria paternally inherited? Current Opinion in Genetics & Development, 80, 102053.

Newman, S. A. (2023). Inherency and agency in the origin and evolution of biological functions. Biological Journal of the Linnean Society, 139(4), 487–502.

Newman, S.A. (2012). "Physico-genetic determinants in the evolution of development." Science 338:217–219.

Newman, S.A. (2016). "’Biogeneric’ developmental processes: drivers of major transitions in animal evolution." Philosophical Transactions of the Royal Society B: Biological Sciences 371(1701). https://doi.org/10.1098/rstb.2015.0443.>

Newman, S.A. (2022). “Form, function, agency: sources of natural purpose in animal evolution.” In Evolution ‘on Purpose’: Teleonomy in Living Systems. Edited by P. Corning, D. Noble, J. Shapiro and R. Vane-Wright. Cambridge (MA): The MIT Press.

O’Malley, M.A. and Powell, R. (2016). “Major problems in evolutionary transitions: how a metabolic perspective can enrich our understanding of macroevolution.” Biology & Philosophy 31:159–189.

Oderberg, D. S. (2021). Restoring the Hierarchy of Being. In W. M. R. Simpson, R. C. Koons, & J. Orr, Neo-Aristotelian Metaphysics and the Theology of Nature (1st ed., pp. 94–124). Routledge.

Pettersen, A. K., Ruuskanen, S., Nord, A., Nilsson, J. F., Miñano, M. R., Fitzpatrick, L. J., While, G. M., & Uller, T. (2023). Population divergence in maternal investment and embryo energy use and allocation suggests adaptive responses to cool climates. Journal of Animal Ecology, 1365-2656.13971.