Publications

Wucherpfennig, J. I., Howes, T. R., Au, J. N., Au, E. H., Roberts Kingman, G. A., Brady, S. D., Herbert, A. L., Reimchen, T. E., Bell, M. A., Lowe, C. B., Dalziel, A. C., & Kingsley, D. M. (2022). Evolution of stickleback spines through independent cis-regulatory changes at HOXDB. Nature Ecology & Evolution.

Yazdi, H. P., Olito, C., Kawakami, T., Unneberg, P., Schou, M. F., Cloete, S. W. P., Hansson, B., & Cornwallis, C. K. (2023). The evolutionary maintenance of ancient recombining sex chromosomes in the ostrich. PLOS Genetics, 19(6), e1010801.

Zambre, A. M., Burns, L., Suresh, J., Hegeman, A. D., & Snell-Rood, E. C. (n.d.). Developmental plasticity in multimodal signals: light environment produces novel signalling phenotypes in a butterfly. 6.

Aguadé-Gorgorió, G., Arnoldi, J.-F., Barbier, M., & Kéfi, S. (2023). A taxonomy of multiple stable states in complex ecological communities [Preprint]. Ecology.

Cuypers, V., & Reydon, T. A. C. (2023). An oak is an oak, or not? Understanding and dealing with confusion and disagreement in biological classification. Biology & Philosophy, 38(5), 39.

Donoghue, P. C. J., Kay, C., Spang, A., Szöllősi, G., Nenarokova, A., Moody, E. R. R., Pisani, D., & Williams, T. A. (2023). Defining eukaryotes to dissect eukaryogenesis. Current Biology, 33(17), R919–R929.

Foster, P. G., Schrempf, D., Szöllősi, G. J., Williams, T. A., Cox, C. J., & Embley, T. M. (2023). Recoding Amino Acids to a Reduced Alphabet may Increase or Decrease Phylogenetic Accuracy. Systematic Biology, 72(3), 723–737.

Holm, S. (2023). Egalitarianism and Algorithmic Fairness. Philosophy & Technology, 36(1), 6.

Holm, S. H., & Lippert-Rasmussen, K. (2023). Discrimination, Fairness, and the Use of Algorithms. Res Publica, 29(2), 177–183.

Juravel, K., Porras, L., Höhna, S., Pisani, D., & Wörheide, G. (2023). Exploring genome gene content and morphological analysis to test recalcitrant nodes in the animal phylogeny. PLOS ONE, 18(3), e0282444.

Love, A. C., & Wagner, G. P. (2023). Telling stories about unseen ancestors. Current Biology, 33(16), R841–R842.

Morel, B., Williams, T. A., & Stamatakis, A. (2023). Asteroid: a new algorithm to infer species trees from gene trees under high proportions of missing data. Bioinformatics, 39(1), btac832.

Nieves Delgado, A., Ludwig, D., & El-Hani, C. (2023). Pluralist Ethnobiology: Between Philosophical Reflection and Transdisciplinary Action. Journal of Ethnobiology, 43(3), 191–197.

Paz-Sedano, S., Smirnoff, D., Candás, M., Gosliner, T. M., & Pola, M. (2022). Rediscovering the overlooked genus Murphydoris (Nudibranchia: Goniodorididae): the first phylogeny and addition of four new species. Zoological Journal of the Linnean Society, 196(1), 250–269.

Paz-Sedano, S., Smirnoff, D., Gosliner, T. M., & Pola, M. (2023). When a genus must become two: resurrection of Pelagella Gray, 1850 with the description of six new species. Journal of Molluscan Studies, 89(2), eyad008.

Petersen, E., Ganz, M., Holm, S. H., & Feragen, A. (2023). On (assessing) the fairness of risk score models (arXiv:2302.08851). arXiv.

Sabroux, R., Edgecombe, G. D., Pisani, D., & Garwood, R. J. (2023). New insights into the sea spider fauna (Arthropoda, Pycnogonida) of La Voulte‐sur‐Rhône, France (Jurassic, Callovian). Papers in Palaeontology, 9(4), e1515.

Smirnoff, D. S., Donohoo, S. A., & Gosliner, T. M. (2022). Extra-branchial processes manifest extra diversity: systematics of the genus Trapania (Nudibranchia: Goniodorididae) and nine new species descriptions. Zoological Journal of the Linnean Society, 196(1), 270–313.

Sterner, B., Sen, A., & Witteveen, J. (2022). Consensus and Scientific Classification. Knowledge Organization, 49(4), 236–256.

Valach, M., Moreira, S., Petitjean, C., Benz, C., Butenko, A., Flegontova, O., Nenarokova, A., Prokopchuk, G., Batstone, T., Lapébie, P., Lemogo, L., Sarrasin, M., Stretenowich, P., Tripathi, P., Yazaki, E., Nara, T., Henrissat, B., Lang, B. F., Gray, M. W., … Burger, G. (2023). Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes. BMC Biology, 21(1), 99.

Williams, S. E., Back, C. R., Best, E., Mantell, J., Stach, J. E. M., Williams, T. A., Race, P. R., & Curnow, P. (2023). Discovery and biosynthetic assessment of “Streptomyces ortus” sp. nov. isolated from a deep-sea sponge. Microbial Genomics, 9(5).

Alroy, J., M. Aberhan, D.J. Bottjer, M. Foote, F.T. Fürsich, P.J. Harries, A.J.W. Hendy, S.M. Holland, L.C. Ivany, W. Kiessling, M.A. Kosnik, C.R. Marshall, A.J. McGowan, A.I. Miller, T.D. Olszewski, M.E. Patzkowsky, S.E. Peters, L. Villier, P.J. Wagner, N. Bonuso, P.S. Borkow, B. Brenneis, M.E. Clapham, L.M. Fall, C.A. Ferguson, V.L. Hanson, A.Z. Krug, K.M. Layou, E.H. Leckey, S. Nürnberg, C.M. Powers, J.A. Sessa, C. Simpson, A. Tomašových, C.C. Visaggi. (2008). “Phanerozoic trends in the global diversity of marine invertebrates.” Science 321:97–100.

Argüelles-Moyao, A., Benítez, M., Escalante, A. E., & Garibay-Orijel, R. (2022). Unipartite and bipartite mycorrhizal networks of Abies religiosa forests: Incorporating network theory into applied ecology of conifer species and forest management. Ecological Complexity, 50, 101002.

Barbier, M. (2023). Ecological perturbation. In B. M. Haddad & B. D. Solomon (Eds.), Dictionary of Ecological Economics (pp. 153–153). Edward Elgar Publishing.