Publications

Genomics

Álvarez-Carretero, S., Kapli, P., & Yang, Z. (2023). Beginner’s Guide on the Use of PAML to Detect Positive Selection. Molecular Biology and Evolution, 40(4), msad041.

Álvarez-Carretero, S., Kapli, P., & Yang, Z. (2023). Beginner’s Guide on the Use of PAML to Detect Positive Selection. Molecular Biology and Evolution, 40(4), msad041.

Au, E. H., Fauci, C., Luo, Y., Mangan, R. J., Snellings, D. A., Shoben, C. R., Weaver, S., Simpson, S. K., & Lowe, C. B. (2023). Gonomics: uniting high performance and readability for genomics with Go. Bioinformatics, 39(8), btad516.

Davín, A. A., Schrempf, D., Williams, T. A., Hugenholtz, P., & Szöllősi, G. J. (2022). Relative Time Inference Using Lateral Gene Transfers. In H. Luo (Ed.), Environmental Microbial Evolution (Vol. 2569, pp. 75–94). Springer US. https://doi.org/10.1007/978-1-0716-2691-7_4

Gehlert, F. O., Nickel, L., Vakirlis, N., Hammerschmidt, K., Vargas Gebauer, H. I., Kießling, C., Kupczok, A., & Schmitz, R. A. (2023). Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon. Nucleic Acids Research, 51(13), 6927–6943.

Gomez-Garrido, J., Cruz, F., Alioto, T. S., Feiner, N., Uller, T., Gut, M., Sanchez Escudero, I., Tavecchia, G., Rotger, A., Otalora Acevedo, K. E., & Baldo, L. (2023). Chromosome-level genome assembly of Lilford’s wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain). DNA Research, 30(3), dsad008.

Juravel, K., Porras, L., Höhna, S., Pisani, D., & Wörheide, G. (2023). Exploring genome gene content and morphological analysis to test recalcitrant nodes in the animal phylogeny. PLOS ONE, 18(3), e0282444.

Lin, H., Moody, E. R. R., Williams, T. A., & Moreau, J. (2023). On the Origin and Evolution of Microbial Mercury Methylation. Genome Biology and Evolution, 15(4).

Livnat, A., & Melamed, D. (2023). Evolutionary honing in and mutational replacement: how long-term directed mutational responses to specific environmental pressures are possible. Theory in Biosciences, 142(2), 87–105.

Sarkar S. GWASs and polygenic scores inherit all the old problems of heritability estimates. Behavioral and Brain Sciences. 2023;46:e227.

Valach, M., Moreira, S., Petitjean, C., Benz, C., Butenko, A., Flegontova, O., Nenarokova, A., Prokopchuk, G., Batstone, T., Lapébie, P., Lemogo, L., Sarrasin, M., Stretenowich, P., Tripathi, P., Yazaki, E., Nara, T., Henrissat, B., Lang, B. F., Gray, M. W., … Burger, G. (2023). Recent expansion of metabolic versatility in Diplonema papillatum, the model species of a highly speciose group of marine eukaryotes. BMC Biology, 21(1), 99.

Williams, S. E., Back, C. R., Best, E., Mantell, J., Stach, J. E. M., Williams, T. A., Race, P. R., & Curnow, P. (2023). Discovery and biosynthetic assessment of “Streptomyces ortus” sp. nov. isolated from a deep-sea sponge. Microbial Genomics, 9(5).

Yazdi, H. P., Olito, C., Kawakami, T., Unneberg, P., Schou, M. F., Cloete, S. W. P., Hansson, B., & Cornwallis, C. K. (2023). The evolutionary maintenance of ancient recombining sex chromosomes in the ostrich. PLOS Genetics, 19(6), e1010801.